PRESENCE 12.6 - Estimates patch occupancy rates and related parameters. This work is in collaboration with Darryl MacKenzie, and is largely funded by the Amphibian Research and Monitoring Initiative (ARMI). Contact Darryl if you would like to learn more about this project.
RPresence - Provides an R interface for running occupancy models available in Program PRESENCE plus some additional helpful routines.
GENPRES - Generates patch occupancy data and analyzes using program PRESENCE.
OccPower.xlsx - Spreadsheet to compute power to detect difference in 2 independent occupancy estimates using asymptotic approximations described in Guillera-Arroita et. al. (2012).
|MacKenzie, D. I., J. D. Nichols, J. A. Royle, K. H. Pollock, L.L. Bailey, and J. E. Hines. 2005. Occupancy Estimation and Modeling - Inferring Patterns and Dynamics of Species Occurrence. Elsevier Publishing.|
|MacKenzie, D. I., J. D. Nichols, G. B. Lachman, S. Droege, J. A. Royle and C. A. Langtimm. 2002. Estimating site occupancy rates when detection probabilities are less than one. Ecology 83(8): 2248-2255|
|MacKenzie, D. I., J. D. Nichols, J. E. Hines, M. G. Knutson and A. B. Franklin. 2003. Estimating site occupancy, colonization and local extinction probabilities when a species is detected imperfectly. Ecology 84(8) 2200-2207.|
|Bailey, L. L., J.D. Nichols and J.E. Hines. 2007. Exploring Sampling Design Trade-Offs In Occupancy Studies With imperfect detection: examples and software. Ecological Applications, 17(1). pp. 281-290.|
|Guillera-Arroita, G. and J.J. Lahoz-Monfort. 2012. Designing studies to detect differences in species occupancy: power analysis under imperfect detection. Methods in Ecology and Evolution 2012, 3, 860-869.|
Worked Examples and Exercises in PRESENCE
|PRESENCE 12.6||(last modified:) Tuesday, 08-Aug-2017 11:18:10 EDT|
|PRESENCE 12.6 (no install/setup program)||(last modified:) Tuesday, 08-Aug-2017 11:18:10 EDT|
|GENPRES8 (no install/setup program)||(last modified:) Friday, 27-Jan-2017 09:51:12 EST|
|RPresence binary package for Windows||(last modified:) Tuesday, 08-Aug-2017 11:18:11 EDT|
|RPresence source package for OSX/Linux||(last modified:) Tuesday, 08-Aug-2017 11:18:11 EDT|
|OccPower.xlsx||(last modified:) Friday, 19-Dec-2014 08:01:45 EST|
|Genpres||(last modified:) Friday, 27-Jan-2017 09:46:50 EST|
|Presence and Genpres binaries for Linux||(last modified:) Tuesday, 08-Aug-2017 11:18:26 EDT|
|Presence and Genpres source (no GUI)||(last modified:) Tuesday, 08-Aug-2017 11:18:14 EDT|