Program JOLLYAGE

JOLLYAGE - Computes estimates of survival and capture probability for 2-age class open population capture-recapture models. Note: A more modern Windows© program, Mark (http://www.cnr.colostate.edu/~gwhite/mark/mark.htm), (written by G. White) is recommended instead of JOLLYAGE.

The Jolly-Seber method applied to age-stratified populations (See Stokes 1984, J. Wild. Manage. 48:1053-1059; also Pollock 1981, Biometrics 37:521-529)

Definitions and notation:

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You can enter an ASCII text file in the box below. The file should look like the example below: 
Sample input: TITLE=JOLLYAGE SAMPLE DATA

2 1 0 0 0 0 0 0 0 14
2 1 1 0 0 0 0 0 0  4
2 1 1 1 1 1 0 0 0  1
2 1 0 1 0 0 0 0 0  1
2 0 1 0 0 0 0 0 0 25
2 0 1 1 0 0 0 0 0  3
2 0 1 0 1 0 0 0 0  1
2 0 0 1 0 0 0 0 0 18
2 0 0 1 1 0 0 0 0  2
2 0 0 1 0 1 0 0 0  1
2 0 0 0 1 0 0 0 0 25
2 0 0 0 1 1 0 0 0  2
2 0 0 0 1 1 1 1 0  1
2 0 0 0 1 1 0 0 1  1
2 0 0 0 0 1 0 0 0  8
2 0 0 0 0 1 1 0 0  2
2 0 0 0 0 1 1 1 0  1
2 0 0 0 0 0 1 0 0 34
2 0 0 0 0 0 1 1 0 12
2 0 0 0 0 0 1 1 1  1
2 0 0 0 0 0 0 1 0 18
2 0 0 0 0 0 0 1 1  4
1 1 0 0 0 0 0 0 0 19
1 1 1 0 0 0 0 0 0  5
1 1 1 1 1 0 0 0 0  2
1 1 0 1 0 0 0 0 0  2
1 1 0 0 1 0 0 0 0  1
1 0 1 0 0 0 0 0 0  8
1 0 1 1 0 0 0 0 0  2
1 0 0 1 0 0 0 0 0  9
1 0 0 1 1 0 0 0 0  4
1 0 0 1 0 1 0 0 0  1
1 0 0 1 1 1 0 0 0  1
1 0 0 1 1 0 1 0 0  1
1 0 0 1 1 0 0 1 0  1
1 0 0 0 1 0 0 0 0  9
1 0 0 0 1 1 1 0 0  1
1 0 0 0 0 1 0 0 0 11
1 0 0 0 0 1 1 0 0  2
1 0 0 0 0 1 1 1 0  3
1 0 0 0 0 0 1 0 0 14
1 0 0 0 0 0 1 1 0  5
1 0 0 0 0 0 1 0 1  1
1 0 0 0 0 0 0 1 0 12
1 0 0 0 0 0 0 1 1  2


Sample input: TITLE=CANADA GOOSE TRAPPING DATA, TENN. (FROM CROMER 1978)

    0   88   98   88   98   68   63    0
  111  126   78  126   78  106   59   20
  144  168  121  168  121  126   74   41
  158  196  143  196  143  171  116   83
  305  327  302  327  290  232  235   65
  442  515  286  515  230  415  201   90
  615  721  305  721  257  527  224   91
  722  840  307  840   86  606   53  120
  644  834  395  834   95  529   71  135
  735 1149  828 1149  436    0    0    0


Sample input: TITLE=FEMALE CANADA GEESE (BIOMETRICS 1981:526)

 1 00 00 11 00   23
 1 00 00 11 11   27
 1 00 11 00 00   21
 1 00 11 00 11    2
 1 00 11 11 00   16
 1 00 11 11 11   15
 1 11 00 00 00   20
 1 11 11 00 00   17
 1 11 11 00 11    1
 1 11 11 11 00   11
 1 11 11 11 11   18
 2 00 00 11 00  110
 2 00 00 11 11   60
 2 00 11 00 00  101
 2 00 11 00 11    6
 2 00 11 11 00   43
 2 00 11 11 11   40
 2 11 00 00 00   57
 2 11 00 00 11    3
 2 11 00 11 00    1
 2 11 00 11 11    1
 2 11 11 00 00   31
 2 11 11 00 11    2
 2 11 11 11 00   17
 2 11 11 11 11   17


TITLE=JOLLYAGE TEST DATA: P=.6, FI=.7, FY=.5, N=500, N'=300

1 0000000011  166
1 0000001100  269
1 0000001111  194
1 0000110000  211
1 0000110011   52
1 0000111100  109
1 0000111111   81
1 0011000000  181
1 0011000011   14
1 0011001100   28
1 0011001111   21
1 0011110000   80
1 0011110011   21
1 0011111100   43
1 0011111111   32
1 1100000000  126
1 1100000011    3
1 1100001100    6
1 1100001111    4
1 1100110000   16
1 1100110011    4
1 1100111100    8
1 1100111111    7
1 1111000000   54
1 1111000011    4
1 1111001100    8
1 1111001111    7
1 1111110000   24
1 1111110011    7
1 1111111100   13
1 1111111111    9
2 0000001100  126
2 0000001111   54
2 0000110000  111
2 0000110011   15
2 0000111100   31
2 0000111111   23
2 0011000000  107
2 0011000011    4
2 0011001100    8
2 0011001111    7
2 0011110000   24
2 0011110011    7
2 0011111100   13
2 0011111111   10
2 1100000000  106
2 1100000011    1
2 1100001100    2
2 1100001111    2
2 1100110000    6
2 1100110011    2
2 1100111100    4
2 1100111111    3
2 1111000000   22
2 1111000011    2
2 1111001100    4
2 1111001111    3
2 1111110000   11
2 1111110011    2
2 1111111100    6
2 1111111111    4

 
TITLE=CANADIAN JOURNAL EXAMPLE
COMMENT
COMMENT This data file shows the input format where
COMMENT each capture period is represented by two
COMMENT columns.  The first column is either 0
COMMENT (not captured), or 1 (captured).  The
COMMENT second column is either 0 (not released)
COMMENT or 1 (released).
COMMENT

2 1100000000000000 14
2 1111000000000000  4
2 1111111111000000  1
2 1100110000000000  1
2 0011000000000000 25
2 0011110000000000  3
2 0011001100000000  1
2 0000110000000000 18
2 0000111100000000  2
2 0000110011000000  1
2 0000001100000000 25
2 0000001111000000  2
2 0000001111111100  1
2 0000001111000011  1
2 0000000011000000  8
2 0000000011110000  2
2 0000000011111100  1
2 0000000000110000 34
2 0000000000111100 12
2 0000000000111111  1
2 0000000000001100 18
2 0000000000001111  4
1 1100000000000000 19
1 1111000000000000  5
1 1111111100000000  2
1 1100110000000000  2
1 1100001100000000  1
1 0011000000000000  8
1 0011110000000000  2
1 0000110000000000  9
1 0000111100000000  4
1 0000110011000000  1
1 0000111111000000  1
1 0000111100110000  1
1 0000111100001100  1
1 0000001100000000  9
1 0000001111110000  1
1 0000000011000000 11
1 0000000011110000  2
1 0000000011111100  3
1 0000000000110000 14
1 0000000000111100  5
1 0000000000110011  1
1 0000000000001100 12
1 0000000000001111  2